Shifting lakes, coastlines and mountains: how millions of years of environmental changes shaped the evolution of a little fish

The roles of aridification and sea level changes in the diversification and persistence of freshwater fish lineages

The process of publishing science is a lengthy one – there are many rounds of revisions, assessments, and review required before a paper can be published. With that, I’m very proud to announce that the first paper from my PhD has recently been published in the journal Molecular Ecology. This paper is a collection of a lot of complex analyses, and addressing some relatively complicated biogeographical questions, so I’ve decided to provide a simplified summary here.

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Piñataversity – a biodiversity assessment of Viva Piñata

Revisiting Piñata Island

Every now and then, my gaming habits tend to take a bit of a wander down memory lane. Of late, that means cracking out one of my classic faves – the life simulation and “collectathon” Viva Piñata by Rare. Originally released in 2006, with successor (expanded version, essentially) Viva Piñata: Trouble in Paradise released in 2008, the game essentially involves creating a lavish garden to attract wild piñata-like animals. Although a little light on plot, the main goal is to entice these wild creatures (Wilds) to stay in your garden (becoming Residents), to later be sent off to parties across the globe. Trouble in Paradise boasts a roster of 88 different species of Piñatas to collect, as well as a variety of fruiting trees, plants, and flowers to grow.

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A simplified guide to genomic vulnerability

Predicting the future for biodiversity

Conservation biology is frequently referred to as a “crisis discipline“, a status which doesn’t appear to be changing any time soon. Like any response to a crisis, biologists of all walks of life operate under a prioritisation scheme – how can our finite resources be best utilised to save as much biodiversity as possible? This approach requires some knowledge of both current vulnerability and future threat – we need to focus our efforts on those populations and species which are most at-risk of extinction in the near (often immediate) future.

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Incomplete lineage sorting through Pachinko – a visual analogy

Reconstructing evolutionary history

Unravelling the evolutionary history of organisms – one of the main goals of phylogenetic research – remains a challenging prospect due to a number of theoretical and analytical aspects. Particularly, trying to reconstruct evolutionary patterns based on current genetic data (the most common way phylogenetic trees are estimated) is prone to the erroneous influence of some secondary factors. One of these is referred to as ‘incomplete lineage sorting’, which can have a major effect on how phylogenetic relationships are estimated and the statistical confidence we may have around these patterns. Today, we’re going to take a look at incomplete lineage sorting (shortened to ILS for brevity herein) using a game-based analogy – a Pachinko machine. Or, if you’d rather, the same general analogy also works for those creepy clown carnival games, but I prefer the less frightening alternative.

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Dr. G-CAT

Overview of 2020

As you may have gathered, The G-CAT has been significantly less active in this our most Cursed year. There are a number of reasons for that – not just the overall disaster that has been world events – including the fact that this was the last year of my PhD. I’m delighted to announce that now, after ~3.5 years of hard work, I am officially Dr. Buckley (not Dr. G-CAT, as I may have led you to believe)!

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